These exhibits are no longer open in the musum. They are preserved for online viewing.
- Snakes & Lizards: The Summer of Slither
- Extreme Mammals: the Biggest, Smallest, and Most Amazing Mammals of All Time
- From the Depths: Inspiring Science and Art
- Dinosaurs: Ancient Fossils, New Discoveries
- Xtreme Life
- Hotspot: California on the Edge
- Chocolate: The Exhibition
- Ants: Hidden Worlds Revealed
- Arctic National Wildlife Refuge
- Old Academy Virtual Tour (Pre Demolition)
- 150 Years of Science
- Skulls
- X-Ray Ichthyology
- Powers of 10
- Russia's Great Voyages to America
- Anglers All
- Audubon's Birds of America
- Venoms: Striking Beauties
- Africa: One Continent, Many Worlds
- At Home In Vanuatu
- A Thousand Cranes
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